PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G27320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 919aa    MW: 106005 Da    PI: 9.7465
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G27320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.1e-2124113199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+     +++ ++++p kfae++  +   + t++l+ ++g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f   v
  ONIVA03G27320.1  24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 108
                      56666..445555.6********888655..4459***************..**************************************..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k+f+ 
  ONIVA03G27320.1 109 KIFDP 113
                      99986 PP

2B354.22.5e-17212295187
                      EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+vk++++k++ r +l+kGW++F ++n+L++gD+++F+l ++
  ONIVA03G27320.1 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQVGDTCLFELLKN 295
                      77889999999999999**********76555....3455.667*********77666666.89**********************8765 PP

3B365.58.1e-213284091299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++r+++p kfa++++g+   skt++le ++g +++v++  +kk +  vl++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  ONIVA03G27320.1 328 FHKRMTIPDKFARHFKGV--ISKTIKLEPRNGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 409
                      4568********999999..899****************..*******************************976..88889999985 PP

4B340.54.7e-135415913486
                      SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3  34 ktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      ++l+l++ + +sW+v++ ++++ks++  lt+GWk+Fv++n L+ gD ++F+  +
  ONIVA03G27320.1 541 QELMLRH-RDKSWKVRFyRFNNKSRK--LTQGWKRFVHDNYLRMGDLCLFEILK 591
                      5677666.78******9455777777..9**********************655 PP

5B357.42.6e-18625711297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     ++  r+++p++f++ + gk   ++t++l+ ++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+   +v 
  ONIVA03G27320.1 625 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KVL 709
                      5555..44444.57********555666..66789999999********..********************************986555..777 PP

                      EE CS
               B3  96 vf 97 
                      +f
  ONIVA03G27320.1 710 IF 711
                      77 PP

6B347.53.1e-158359181299
                      HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ks+ + + +++a+ +    ke +  +t  +++g+ Wev ++ +k  ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  ONIVA03G27320.1 835 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 918
                      56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-2418116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2518116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5921114IPR003340B3 DNA binding domain
CDDcd100171.51E-2023112No hitNo description
SMARTSM010191.5E-1324114IPR003340B3 DNA binding domain
PfamPF023625.8E-1924112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-29200296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-22205295IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-18210296No hitNo description
SMARTSM010194.2E-12212302IPR003340B3 DNA binding domain
PfamPF023627.9E-16212296IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661213307IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-25312423IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-23314412IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929317410IPR003340B3 DNA binding domain
CDDcd100171.32E-20318408No hitNo description
SMARTSM010191.1E-11320410IPR003340B3 DNA binding domain
PfamPF023621.6E-18320408IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17500593IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-15501593IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-10511588No hitNo description
SMARTSM010191.5E-4512602IPR003340B3 DNA binding domain
PfamPF023622.7E-10540592IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251542602IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-22617716IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.704621714IPR003340B3 DNA binding domain
CDDcd100176.19E-21624711No hitNo description
SMARTSM010193.0E-12624714IPR003340B3 DNA binding domain
PfamPF023623.9E-16624711IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-21634722IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-20817916IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-18818916IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.266824919IPR003340B3 DNA binding domain
CDDcd100172.55E-13826917No hitNo description
SMARTSM010195.6E-8827919IPR003340B3 DNA binding domain
PfamPF023621.2E-13834918IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN  60
GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA  120
SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS  180
SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP  240
GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQVGDTCLF ELLKNENPCG  300
QKMRKLNTRS TARDDQEKYF FKVMIGDFHK RMTIPDKFAR HFKGVISKTI KLEPRNGYTF  360
DVQVTKKLNI LVLGSGWESF VNAHDLNMGD FLVFKYNGDF LLQVLIFDPS GCEKSTSCSM  420
ENAIDHVGQG WKEHNDISTS YHDQPKGNKH WMQKDSSSKG NKIGNTRSSN TPSNFSGCIL  480
PRGTCLPVVQ EKKMKEKIQA IHSKTPMYGN VMTKCNVSGS PCVLEITQLY DDAYLPFNNG  540
QELMLRHRDK SWKVRFYRFN NKSRKLTQGW KRFVHDNYLR MGDLCLFEIL KNKYTMNMRR  600
PGARCREGHA HFNGNHIDGQ YKNFFKVMIG RFRERMIIPN EFLQYFRGKI PRTIKLQLRD  660
GCTYDVQVTK NLGKISLQSG WKAFVTAHDL QMGDFLVFSY DGISKLKVLI FGPSGCEKVH  720
SRPTLKNATH CGEKWEEPLH ISSNSHDLPV KSPQNVSKSE KQWDSSEQEN DTANIEEVAL  780
QGDDLQGHPV LNCILPKHTR LTDMQKQQLE SKVGAIHSEI PIYGCILRKS RVHGKSQTVD  840
ICREYADVYL PFKELNMTLQ RHGKNWEVLC RTKDTRTKRL STGWSRFAQE NNLQVGDICL  900
FELLKKKEYS MNVHIIPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628067.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0GQL10.0A0A0E0GQL1_ORYNI; Uncharacterized protein
STRINGORGLA03G0244700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-26B3 family protein